McShan PhD References
Theory
- PathMiner: predicting metabolic pathways by heuristic search
- Towards inference of a biochemical ontology from a metabolic database
- Retrobiosynthesis: Searching Backwards, Looking Forward (under review)
Applications to Metabolic Reconstruction
- Automatic Reconstruction of Autotrophic Metabolism (under review)
Applications to Predictive Metabolism
Applications to Metabolic Engineering
- Heurstic search for metabolic engineering: de novo synthesis of vanillin
- Searching for Synthetic Biology