McShan PhD References

Theory

• PathMiner: predicting metabolic pathways by heuristic search
• Towards inference of a biochemical ontology from a metabolic database
• Retrobiosynthesis: Searching Backwards, Looking Forward (under review)

Applications to Metabolic Reconstruction

• Automatic Reconstruction of Autotrophic Metabolism (under review)

Applications to Predictive Metabolism

• Symbolic Inference of Xenobiotic Metabolism

Applications to Metabolic Engineering

• Heurstic search for metabolic engineering: de novo synthesis of vanillin
• Searching for Synthetic Biology